Most of the jumpers look labeled and are the front panel connectors .
JP9 and 12 look to be Turbo Switch and Turbo LED
JP10 Mono or Colour graphics
JP13 Reset
JP11 Speaker
JP14 (?) Power LED and Keylock.
JP4 by the PSU connector looks like an external (pin 1&4)/internal (pin 1&2) battery selector, and at a guess it'll also work as a clear CMOS jumper by moving the jumper to either 1&2 or 3&4 (whichever of pin 1 and 4 is the ground, I think pin 2 is the battery +ve pin, so clear CMOS might be 3&4).
JP2&3 might be to select which RAM banks are active.
Can't just see where JP1 is and JP5,6,7,8 aren't fitted. Maybe they're something to do with enabling/disabling the co-processor.
[edit: oh, there it is, over by the barrel 'o doom battery, hard wired as 2-3. No idea about that one.
Oh, and on the battery, top of board looks fine, but there's what looks like some minor damage to a trace on the bottom, so you may want to remove the battery and give that area a clean.]