Well I uploaded most of the files on to archive.org, the ones that were compatible with the latest version and useful ect. Still can't find niteeye2 for the life of me.
I did find a few things of interest though. The menu program included with the Gold Falcon Utilities gives a memory error in DOSBox.
The jungle camo's included "original" file has the following byte differences compared to the default 305/gold vgraph: at 66A, 1A was replaced with 20. At 688, 30 was replaced with 34 although JUNGLE has this as 31. And at 68B, 2D is instead 2B. This leads me to believe that the include "original" vgraph is from an older version of the game. I broke out my original copy of Falcon 3.0 version 3.0D and compared the vgraph to the 305 version and found it's completely different. I then updated it from 3.0D to 302 and found the file was now the same as the 305 one. This likely means that the "original" vgraph is from 301/3.0E, which I unfortunately cannot test as 301 requires the OFT expansion (which aside Gold I don't own) and 3.0E isn't available on the internet.
Lastly, the "Chad" theater (which I didn't upload yet for this very reason) is only playable in Falcon but not MiG or Hornet. A quick inspection and the theater's missing these files: .hpl, .mff, .mfm, .rpl, .msm, .nwm, .stm, .thm. In addition some theaters included a .amo file, Japan includes a .shp file and Nelis includes a .msf but lackes a .nws and .nwm.